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Neveau, M.N., Zeller, M.A., Kaplan, B.S., Souza, C.K., Gauger, P.C., Vincent, A.L., and Anderson, T.K. Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain. bioRxiv 2021.11.17.469008

Markin, A., Wagle, S., Anderson, T.K., and Eulenstein, O.E. RF-Net 2: Fast Inference of Virus Reassortment and Hybridization Networks. bioRxiv 2021.05.05.442676.


71. Arendsee, Z.W., Chang, J., Hufnagel, D.E., Markin, A., Janas-Martindale, A., Vincent, A.L., and Anderson, T.K. (in press). octoFLUshow: an interactive tool describing spatial and temporal trends in the genetic diversity of influenza A virus in U.S. swine. Microbiology Resource Announcements XX:XX. octoFLUshow interactive tool available at

70. Anderson, T.K., Inderski, B., Diel, D., Hause, B., Porter, E., Clement, T., Nelson, E., Bai, J., Christopher-Hennings, J., Gauger, P., Zhang, J., Harmon, K., Main, R., Lager, K., and Faaberg, K. The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine. (in press). Database XX:XX. bioRxiv 2021.04.16.439882.

69. Souza, C.K., Anderson, T.K., Chang, J., Venkatesh, D., Lewis, N.S., Pekosz, A., Shaw-Saliba, K., Rothman, R.E., Chen, K-F, Vincent, A.L. (in press). Antigenic distance between North American swine and human seasonal H3N2 influenza A viruses as an indication of zoonotic risk to humans. Journal of Virology XX: XX.

68. Zeller, M.A., Chang, J., Vincent, A.L., Gauger, P.C., and Anderson, T.K. (in press). Spatial and temporal coevolution of N2 neuraminidase and H1 and H3 hemagglutinin genes of influenza A virus in United States swine. Virus Evolution XX: XX. bioRxiv 2020.05.29.123828.

67. Staton, M., Cannon, E., Sanderson, L., Wegrzyn, J., Anderson, T.K., Buehler, S., Cobo-Simon, I. Faaberg, K., Grau, E., Guignon, V., Gunoskey, J., Inderksi, B., Jung, S., Lager, K., Main, D., Poelchau,m M., Ramnath, R., Richter, P., West., J., and Ficklin, S. (in press). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic, and breeding databases. Briefings in Bioinformatics XX:XX.

66. Kaplan, B.S., Anderson, T.K., Chang, J., Santos, J., Perez, D., Lewis, N.S., and Vincent, A.L. (in press). Evolution and antigenic advancement of N2 neuraminidase of swine influenza A viruses circulating in the United States following two separate introductions from humans seasonal viruses. Journal of Virology XX:XX.

65. Zeller, M.A., Gauger, P.C., Arendsee, Z.W., Souza, C.K., Vincent, A.L., and Anderson, T.K. (2021). Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine. mSphere 6(2): e00920-20.  bioRxiv 2020.08.07.238279;

64. Powell, J.D., Abente, E.J., Chang, J., Souza, C.K., Rajao, D.S., Anderson, T.K., Zeller, M.A., Gauger, P.G., Lewis, N.S., and Vincent, A.L. (2021). Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs. Virology 553: 94-101.

63. Anderson, T.K., Chang, J., Arendsee, Z.W., Venkatesh, D., Souza, C.K., Kimble, J.B., Lewis, N.S., Davis, C.T., and Vincent, A.L. (2021). Swine influenza A viruses and the tangled relationship with humans. In: Influenza: The Cutting Edge (Eds. Y. Kawaoka and G. Neumann). Cold Spring Harbor Perspectives in Medicine, 11(3): a038737.


62. Nicholson, T.L., Waack, U., Anderson, T.K., Bayles, D., Zaia, S.R., Goertz, I., Eppinger, M., Hau, S.J., Brockmeier, S.L., and Shore, S.M. (2020). Comparative virulence and genomic analysis of Streptococcus suis isolates. Frontiers in Microbiology 11: 620843.

61. Kaplan, B.S., Kimble, J.B., Chang, J., Anderson, T.K., Gauger, P.C., Janas-Martindale, A., Killian, M.L., Bowman, A.S., and Vincent, A.L. (2020). Aerosol transmission from infected swine to ferrets of a swine H3N2 virus collected from an agricultural fair and associated with human variant infections. Journal of Virology 94(16): e01009-20.

60. Sharma, A., Zeller, M.A., Li, G., Harmon, K.M., Zhang, J., Hoang, H., Anderson, T.K., Vincent, A.L., and Gauger, P.C. (2020). Diagnostic detection of live attenuated influenza vaccine virus and evidence of reassortment in United States swine. The Journal of Veterinary Diagnostic Investigation 32(2): 301-311.

59. Rambo-Martin, B.L.,  Keller, M.W.,  Wilson, M.M., Nolting, J.M., Anderson, T.K., Vincent, A.L., Bagal, U., Jang, Y., Neuhaus, E.B., Davis, C.T., Bowman, A.S., Wentworth, D.E., and Barnes, J.R. (2020). Influenza A virus field surveillance at a swine-human interface. mSphere 5(1): e00822-19. bioRxiv: 585588; bioRxiv Preprint.

58. Vincent, A.L., Anderson, T.K., and Lager, K.M. (2020). A brief introduction to influenza A virus in swine. In: Animal Influenza Virus (Methods in Molecular Biology 1161) (Ed. E. Spackman). pp. 249-271. Springer.

For full listing see: Google Scholar or My NCBI Collection