Recent Publications

My NCBI Collection

Google Scholar

GitHub for the Flucrew

Preprints

Markin, A., Wagle, S., Anderson, T.K., and Eulenstein, O.E. RF-Net 2: Fast Inference of Virus Reassortment and Hybridization Networks. bioRxiv 2021.05.05.442676.

Zeller, M.A., Chang, J., Vincent, A.L., Gauger, P.C., and Anderson, T.K. Coordinated evolution between N2 neuraminidase and H1 and H3 hemagglutinin genes increased influenza A virus genetic diversity in swine. bioRxiv 2020.05.29.123828.

Anderson, T.K., Inderski, B., Diel, D., Hause, B., Porter, E., Clement, T., Nelson, E., Bai, J., Christopher-Hennings, J., Gauger, P., Zhang, J., Harmon, K., Main, R., Lager, K., and Faaberg, K. The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine. bioRxiv 2021.04.16.439882.

2021

65. Zeller, M.A., Gauger, P.C., Arendsee, Z.W., Souza, C.K., Vincent, A.L., and Anderson, T.K. (2021). Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine. mSphere 6(2): e00920-20.  bioRxiv 2020.08.07.238279; https://doi.org/10.1101/2020.08.07.238279

64. Powell, J.D., Abente, E.J., Chang, J., Souza, C.K., Rajao, D.S., Anderson, T.K., Zeller, M.A., Gauger, P.G., Lewis, N.S., and Vincent, A.L. (2021). Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs. Virology 553: 94-101.

63. Anderson, T.K., Chang, J., Arendsee, Z.W., Venkatesh, D., Souza, C.K., Kimble, J.B., Lewis, N.S., Davis, C.T., and Vincent, A.L. (2021). Swine influenza A viruses and the tangled relationship with humans. In: Influenza: The Cutting Edge (Eds. Y. Kawaoka and G. Neumann). Cold Spring Harbor Perspectives in Medicine, 11(3): a038737.

2020

62. Nicholson, T.L., Waack, U., Anderson, T.K., Bayles, D., Zaia, S.R., Goertz, I., Eppinger, M., Hau, S.J., Brockmeier, S.L., and Shore, S.M. (2020). Comparative virulence and genomic analysis of Streptococcus suis isolates. Frontiers in Microbiology 11: 620843.

61. Kaplan, B.S., Kimble, J.B., Chang, J., Anderson, T.K., Gauger, P.C., Janas-Martindale, A., Killian, M.L., Bowman, A.S., and Vincent, A.L. (2020). Aerosol transmission from infected swine to ferrets of a swine H3N2 virus collected from an agricultural fair and associated with human variant infections. Journal of Virology 94(16): e01009-20.

60. Sharma, A., Zeller, M.A., Li, G., Harmon, K.M., Zhang, J., Hoang, H., Anderson, T.K., Vincent, A.L., and Gauger, P.C. (2020). Diagnostic detection of live attenuated influenza vaccine virus and evidence of reassortment in United States swine. The Journal of Veterinary Diagnostic Investigation 32(2): 301-311.

59. Rambo-Martin, B.L.,  Keller, M.W.,  Wilson, M.M., Nolting, J.M., Anderson, T.K., Vincent, A.L., Bagal, U., Jang, Y., Neuhaus, E.B., Davis, C.T., Bowman, A.S., Wentworth, D.E., and Barnes, J.R. (2020). Influenza A virus field surveillance at a swine-human interface. mSphere 5(1): e00822-19. bioRxiv: 585588; bioRxiv Preprint.

58. Vincent, A.L., Anderson, T.K., and Lager, K.M. (2020). A brief introduction to influenza A virus in swine. In: Animal Influenza Virus (Methods in Molecular Biology 1161) (Ed. E. Spackman). pp. 249-271. Springer.

For full listing see: Google Scholar or My NCBI Collection